{
  "_id": "6a46db576527f6f71f9f75d4",
  "Package": "DSGEr",
  "Type": "Package",
  "Title": "Transcriptional Disruption Score for Gene Sets",
  "Version": "1.3.1",
  "Authors@R": "c(\nperson(given = \"Pingwei\", family = \"Guo\",\nemail = \"1489413126@qq.com\", role = c(\"aut\", \"cre\")),\nperson(given = \"Huijuan\", family = \"Li\",\nemail = \"lihuijuan@xzhmu.edu.cn\", role = \"aut\"))",
  "Description": "Computes pathway-level transcriptional disruption scores\nfrom differential expression p-values using permutation tests\nwith Generalized Pareto Distribution (GPD) tail extrapolation\nand false discovery rate (FDR) correction. Reference: Guo P, Li\nH (2026) DSGE: Disruption Score of Gene Expression for Gene-Set\nEnrichment Analysis. <https://github.com/LHJLab/DSGE>.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Config/roxygen2/version": "8.0.0",
  "RoxygenNote": "7.3.3",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-07-01 08:59:01 UTC",
    "User": "root"
  },
  "Author": "Pingwei Guo [aut, cre], Huijuan Li [aut]",
  "Maintainer": "Pingwei Guo <1489413126@qq.com>",
  "Repository": "https://songif-ofo.r-universe.dev",
  "Date/Publication": "2026-06-30 11:56:49 UTC",
  "RemoteUrl": "https://github.com/cran/DSGEr",
  "RemoteRef": "HEAD",
  "RemoteSha": "b6bfdae8b578fc580ef12fff131db99520e20b9c",
  "MD5sum": "a80c4fe9fc7beed779b474ce11849d7d",
  "_user": "songif-ofo",
  "_type": "src",
  "_file": "DSGEr_1.3.1.tar.gz",
  "_fileid": "a0ee7734d7614475598a10e0b7c825183ebba4d9c247c8e002f05de04589ff10",
  "_filesize": 3191102,
  "_sha256": "a0ee7734d7614475598a10e0b7c825183ebba4d9c247c8e002f05de04589ff10",
  "_created": "2026-07-01T08:59:01.000Z",
  "_published": "2026-07-02T21:42:46.953Z",
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 84884386537,
      "time": 231,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8005104251"
    },
    {
      "job": 84884386746,
      "time": 215,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8005098961"
    },
    {
      "job": 84884386982,
      "time": 210,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8005097058"
    },
    {
      "job": 84884386682,
      "time": 203,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8005094262"
    },
    {
      "job": 84884386966,
      "time": 238,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8005100221"
    },
    {
      "job": 84884386774,
      "time": 392,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8005163817"
    },
    {
      "job": 84884386519,
      "time": 435,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8005167629"
    },
    {
      "job": 84884386576,
      "time": 472,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8005190253"
    },
    {
      "job": 84884386349,
      "time": 192,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8005013069"
    },
    {
      "job": 84884386513,
      "time": 225,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8005102895"
    },
    {
      "job": 84884386427,
      "time": 177,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8005085304"
    },
    {
      "job": 84884386553,
      "time": 164,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8005080565"
    },
    {
      "job": 84884386651,
      "time": 175,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8005085043"
    }
  ],
  "_buildurl": "https://github.com/r-universe/songif-ofo/actions/runs/28505745490",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/DSGEr",
  "_commit": {
    "id": "b6bfdae8b578fc580ef12fff131db99520e20b9c",
    "author": "Pingwei Guo <1489413126@qq.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.3.1\n",
    "time": 1782820609
  },
  "_maintainer": {
    "name": "Pingwei Guo",
    "email": "1489413126@qq.com",
    "login": "songif-ofo",
    "description": "",
    "uuid": 218231900
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "evd",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "POT",
      "role": "Imports"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "AnnotationDbi",
      "role": "Suggests"
    },
    {
      "package": "GO.db",
      "role": "Suggests"
    },
    {
      "package": "KEGGREST",
      "role": "Enhances"
    },
    {
      "package": "org.Hs.eg.db",
      "role": "Enhances"
    },
    {
      "package": "reactome.db",
      "role": "Enhances"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-27",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "1.3.1",
      "date": "2026-06-30"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "songif-ofo",
      "count": 1,
      "uuid": 218231900
    }
  ],
  "_userbio": {
    "uuid": 218231900,
    "type": "user",
    "name": "songif",
    "followers": 0
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/DSGEr"
  },
  "_searchresults": 2,
  "_topics": [
    "cpp"
  ],
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/DSGEr.html",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE",
    "manual.pdf"
  ],
  "_realowner": "songif-ofo",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.3.1",
      "date": "2026-06-30"
    }
  ],
  "_exports": [
    "calc_dsge",
    "dsge_perm_test",
    "get_gaf_header",
    "get_pathway_genes",
    "get_pathway_genes_db",
    "get_pathway_genes_kegg",
    "get_pathway_genes_reactome",
    "pathway_dsge",
    "plot_dsge",
    "plot_dsge_volcano",
    "read_gaf",
    "read_obo"
  ],
  "_help": [
    {
      "page": "calc_dsge",
      "title": "Compute DSGE (Disruption Score of Gene Expression)",
      "topics": [
        "calc_dsge"
      ]
    },
    {
      "page": "dsge_perm_test",
      "title": "Permutation test for DSGE enrichment of a single gene set",
      "topics": [
        "dsge_perm_test"
      ]
    },
    {
      "page": "get_gaf_header",
      "title": "Extract header lines from a GAF file",
      "topics": [
        "get_gaf_header"
      ]
    },
    {
      "page": "get_pathway_genes",
      "title": "Extract gene-pathway (GO term) associations from GAF data",
      "topics": [
        "get_pathway_genes"
      ]
    },
    {
      "page": "get_pathway_genes_db",
      "title": "Build pathway-gene mapping from a Bioconductor OrgDb object",
      "topics": [
        "get_pathway_genes_db"
      ]
    },
    {
      "page": "get_pathway_genes_kegg",
      "title": "Build KEGG pathway-gene mapping from a Bioconductor OrgDb object",
      "topics": [
        "get_pathway_genes_kegg"
      ]
    },
    {
      "page": "get_pathway_genes_reactome",
      "title": "Build Reactome pathway-gene mapping from a Bioconductor OrgDb object",
      "topics": [
        "get_pathway_genes_reactome"
      ]
    },
    {
      "page": "pathway_dsge",
      "title": "Pathway-level DSGE permutation test with FDR correction",
      "topics": [
        "pathway_dsge"
      ]
    },
    {
      "page": "plot_dsge",
      "title": "Plot null distribution vs. observed DSGE for selected pathways",
      "topics": [
        "plot_dsge"
      ]
    },
    {
      "page": "plot_dsge_volcano",
      "title": "Gene-level volcano plot for a specific pathway",
      "topics": [
        "plot_dsge_volcano"
      ]
    },
    {
      "page": "read_gaf",
      "title": "Read a Gene Ontology Annotation File (GAF)",
      "topics": [
        "read_gaf"
      ]
    },
    {
      "page": "read_obo",
      "title": "Read GO term names from an OBO file",
      "topics": [
        "read_obo"
      ]
    }
  ],
  "_readme": "https://github.com/cran/DSGEr/raw/HEAD/README.md",
  "_rundeps": [
    "data.table",
    "evd",
    "POT",
    "Rcpp"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_score": 1.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "dsger",
  "_universes": [
    "songif-ofo"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.3.1",
      "date": "2026-07-01T09:02:59.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "b6bfdae8b578fc580ef12fff131db99520e20b9c",
      "fileid": "2b3d3cfeae5090fac46cd50237dd80b3b8e39396b64519adf80e1fc10ae6a1dc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/songif-ofo/actions/runs/28505745490"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.3.1",
      "date": "2026-07-01T09:02:39.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "b6bfdae8b578fc580ef12fff131db99520e20b9c",
      "fileid": "f243c1655b7ffd06a8dc51eb0593b3bbb1e690f62e773e6a47a0d8affe79a041",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/songif-ofo/actions/runs/28505745490"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.3.1",
      "date": "2026-07-01T09:02:39.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "b6bfdae8b578fc580ef12fff131db99520e20b9c",
      "fileid": "b3cc72c85dca5ba23074f2609575a21264d0af33af0a6c29243b57fe838284d2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/songif-ofo/actions/runs/28505745490"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.3.1",
      "date": "2026-07-01T09:02:28.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "b6bfdae8b578fc580ef12fff131db99520e20b9c",
      "fileid": "5da64e6f699662ffef45b1df517b42168eaac6aaa60d8177e4155ebd004c60f5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/songif-ofo/actions/runs/28505745490"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.3.1",
      "date": "2026-07-01T09:02:41.000Z",
      "arch": "aarch64",
      "commit": "b6bfdae8b578fc580ef12fff131db99520e20b9c",
      "fileid": "7045466a7f428a08f7042120dff92fcf07b1d5f9dfc42d3dc8315b288dd160c3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/songif-ofo/actions/runs/28505745490"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.3.1",
      "date": "2026-07-01T09:05:02.000Z",
      "arch": "x86_64",
      "commit": "b6bfdae8b578fc580ef12fff131db99520e20b9c",
      "fileid": "f5d02caccb005ad0d921f02c36d3bbb4ef9362d24911f98e2ad1aa040e897183",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/songif-ofo/actions/runs/28505745490"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.3.1",
      "date": "2026-07-01T09:04:36.000Z",
      "arch": "aarch64",
      "commit": "b6bfdae8b578fc580ef12fff131db99520e20b9c",
      "fileid": "4c76a06effabcb89dab05d1f1d9b0d5065daf52eb890de6c7eb10597bf9a63f5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/songif-ofo/actions/runs/28505745490"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.3.1",
      "date": "2026-07-01T09:06:03.000Z",
      "arch": "x86_64",
      "commit": "b6bfdae8b578fc580ef12fff131db99520e20b9c",
      "fileid": "00c06c6e219653a69a37e0683af92e850196b45cfacbf849d0d9b162b07ffb3a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/songif-ofo/actions/runs/28505745490"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.3.1",
      "date": "2026-07-01T09:03:04.000Z",
      "arch": "emscripten",
      "commit": "b6bfdae8b578fc580ef12fff131db99520e20b9c",
      "fileid": "a2c93bd702f79126158cafb00871c8d46855150f4ae49d20bbbbc9cc738ac65e",
      "status": "success",
      "buildurl": "https://github.com/r-universe/songif-ofo/actions/runs/28505745490"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.3.1",
      "date": "2026-07-01T09:01:44.000Z",
      "arch": "x86_64",
      "commit": "b6bfdae8b578fc580ef12fff131db99520e20b9c",
      "fileid": "b9fff148753c25a88b5d28839403e160cc4658f968036530f8587ee391ed084e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/songif-ofo/actions/runs/28505745490"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.3.1",
      "date": "2026-07-01T09:01:31.000Z",
      "arch": "x86_64",
      "commit": "b6bfdae8b578fc580ef12fff131db99520e20b9c",
      "fileid": "c2fe7d24e7d3d33b10b0730e6ddec71d7bf07a29dad103182b6717aa10c3dcf6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/songif-ofo/actions/runs/28505745490"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.3.1",
      "date": "2026-07-01T09:01:44.000Z",
      "arch": "x86_64",
      "commit": "b6bfdae8b578fc580ef12fff131db99520e20b9c",
      "fileid": "0daf724ec065a297d9553110c1900959e59b2ee69e898d094d874e0c766adcfe",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/songif-ofo/actions/runs/28505745490"
    }
  ]
}